Oligo Designer

Sequence
5'- -3'
OD / µg / nmol
Results
Sequence:
nmoles:
µg:
OD260:
nmole/OD260:
µg/OD260:
Anhydrous MW:
Tm (Salt Adjusted):
GC Content:
Extinction Coefficient:
Length:
_TEST1 _TEST1
1,3-DIAZA-2-OXOPHENOXAZINE tCo
1-Methyl-A N1-Me-rA
1-Methyl-PseudoUridine 1-Me-Psd U
2,6-diamino purine rDAP
2'-Amino C NH2-C
2'-Amino U NH2-U
2'-dU dU
2'-F rA thiophosphoramidite fAss
2'-F rU thiophosphoramidite fUss
2'-F-Arabinonucleic Acid (2'-F-A-ANA) FANA-A
2'-F-Arabinonucleic Acid (2'-F-Ac-C-ANA) FANA-C
2'-F-Arabinonucleic Acid (2'-F-G-ANA) FANA-G
2'-F-Arabinonucleic Acid (2'-F-U-ANA) FANA-U
2'-OMe-Ac-C-PACE mC-PACE
2'-OMe-A-PACE mA-PACE
2'-OMe-G-PACE mG-PACE
2'-OMe-rU thiophosphoramidite mUss
2'-OMe-U-PACE mU-PACE
2'-Propargyl rA Prg A
2'-Propargyl rC Prg C
2'-Propargyl rG Prg G
2'-TBDMS rU thiophosphoramidite rUss
3' Azide PEG4 N3-PEG4
3' Dabcyl CPG 3-Dabcyl
3' Hexynyl 3-Hexynyl
3'-(6-Fluorescein) CPG 3-6FAM
3'-6-Fluorescein CPG 3'-6Fluorescein
3'-6-Fluorescein Serinol CPG 3'-6-Fluorescein Serinol
3'-Biotin CPG 3-Biotin
3'-Black Berry Quencher 650 II 3'-BBQ 650 II
3'-ddC ddC
3'-Fluorescein CPG 3'-Fluorescein
3'-symmetric doubler sym-dbler-chemgen
3'-symmetric doubler-Glenres Sym-dbler-Glen
4-thio dT 4-thio dT
4-Thio-dU 4-Thio-dU
4-ThioUridine 4-Thio U
5' BHQ-1 5BHQ-1
5' Biotin 5 Biotin
5' C6 Cholesteryl C6 Chlst
5' Formylindole Formylindole
5'-Azido-dT 5-N3-dT
5-Br dC 5Br-dC
5-Br-dU 5-Br-dU
5'-C6 Cholesterol 5-Chl-C6
5-carboxy-dC 5-carboxy-dC
5'-Dichloro-dimethoxy-Fluorescein Phosphoramidite II JOE-TM
5'dimethoxy VP 2' F Uridine 5dOMe-VP-fU
5-Ethynyl-dU Ethynyl dU
5-F dC 5-F-dC
5-F-dU CEP 5-F-dU
5'-Fluorescein Phosphoramidite 6-FAM
5'-Hexachloro-Fluorescein Phosphoramidite HEX
5-Hydroxymethyl dC 5-Hydroxymethyl dC
5-I dU 5-I dU
5'-Iodide dT 5-I-dT
5-Me 2'-OMe Cytidine 5-Me-mC
5-Me dC brancher 5-Me dC Brch
5-Me-2'-MeO rC 5-Me-Cm
5-Me-C-TOM-CE 5-Me rC
5-Me-dC 5-Me dC
5-Me-dC Brancher 5-Me-dC Brancher
5-MethylUridine 5-Me-U
5-Nitroindole Nitroindole
5-Propargyloxy dU 5-Propar dU
5'-Pyrene Cap Py Cap
5'-Tetrachloro-Fluorescein Phosphoramidite TET-TM
6-Fluorescein Phosphoramidite IntFAM
6-Fluorescein Serinol Phosphoramidite SerinolFAM
6-ROX NHS ester 5-6ROX
6-TAMRA-by 6-TAMRA-by
6-Thio-G 6-Thio-G
6-Thiol-dG 6-Thiol-dG
7-amido-7-deaza-2'-deoxyguanosine 7-Amid-7-deA-dG
7-Deaza-8-aza-dG PPG
8-Oxo-dG 8-Oxo-dG
Abasic II Abasic II
Abberior® STAR 580 Abb 580
Acridine Acridine
Acrydite TM Acrydite
AF 532 NHS AF532
Aldehyde C2 Aldehyde
Alexa Fluor 405 NHS AF405
Alexa Fluor 488 C5 Maleimide AF 488M
Alexa Fluor 488 NHS AF 488
Alexa Fluor 532 NHS AF 532
Alexa Fluor 546 NHS AF 546
Alexa Fluor 555 NHS AF555
Alexa Fluor 568 NHS AF 568
Alexa Fluor 594 NHS AF594
Alexa Fluor 610-X NHS AF 610-X
Alexa Fluor 647 AF647
Alexa Fluor 660 NHS AF 660
Alexa Fluor 680 NHS AF 680
Alexa Fluor 750 C5 Maleimide AF 750M
Alexa Fluore 750 AF 750
Alkyne CPG 3-Alkyne
Amino 7 modifier Amino 7
Amino C6 AmC6-Glen
Amino C6 dG AmC6 dG
Amino C6-Chemgen AmC6-Chemg
Amino linker-amc Amino linker-amc
Amino Modifier C12 AmC12
Amino-Modifier 5 Am5
Amino-Modifier C2 dT AMC2 dT
Amino-Modifier C3 Am C3
Amino-Modifier C6 dA AmC6 dA
Amino-Modifier C6 dC AmC6 dC
Amino-modifier C6 dT AmC6 dT
Amino-Modifier C6-U AmC6 U
Amino-Modifier C7 AmC7
Amino-Modifier Serinol Amserinol
Amino-Modifier Serinol Phosphoramidite Serinol Amino
Amino-Modifier TEG AmTEG
Aminooxy-Modifier-11-CE Phosphoramidite Amox11
ATTO 390 NHS ATTO 390
ATTO 425 NHS ATTO 425
ATTO 465 NHS ATTO 465
ATTO 488 NHS ATTO 488
ATTO 490LS NHS ATTO 490LS
ATTO 514 NHS ATTO 514
ATTO 520 NHS ATTO 520
ATTO 532 NHS ATTO 532
ATTO 550 NHS ATTO 550
ATTO 565 NHS ATTO 565
ATTO 590 NHS ATTO 590
ATTO 594 NHS ATTO 594
ATTO 610 NHS ATTO 610
ATTO 633 NHS ATTO 633
ATTO 647N NHS ATTO 647N
ATTO 655 NHS ATTO 655
ATTO 665 NHS ATTO 665
ATTO 700 NHS ATTO 700 NHS
ATTO Methlyene Blue2 maleimide ATTO MB2 maleimide
ATTO Methlyene Blue2 NHS ester ATTO MB2 NHS ester
ATTO Rho 6G NHS ATTO-Rho-6G
ATTORHO 11 NHS ATTORHO 11
Azide CPG-By Azide-By
Azide PEG4 NHS Azide PEG4
Azido PEG NHS Azido PEG
Azido PEG4 NHS Azido PEG4
Azidobutyrate NHS Azidobutyrate
Azobenzene AzBen
BBQ-650 CPG 3'-BBQ-650
BHQ-1 CPG BHQ-1
BHQ-2 CPG BHQ-2
BHQ-3 CPG BHQ-3
BHQ-3 NHS ester BHQ-3 NHS
Biotin dT Biotin dT
Biotin-desthiol TEG DesthioBiotin TEG
Biotin-PEG3-NHS Biotin PEG3-NHS
Biotin-PEG4-NHS Biotin-PEG4
BiotinTEG BiotinTEG
BiotinTEG CPG 3-BiotinTEG
Bromohexyl Bromohexyl
Butyric acid BA
C3 Spacer SpC3
C6 hydrzide C6NHNH2
C8-Alkyne-dC C8-Alkyne-dC
C8-Alkyne-dC-CE C8Alkyne dC
C8-Alkyne-dT C8Alkyne dT
C8-TIPS-Alkyne-dC C8TIPS Alky dC
C8-TMS-Alkyne-dC C8TMS Alky dC
C8-TMS-Alkyne-dT C8TMS Alky dT
Carboxy Carboxy
Carboxy-dT Carboxy dT
Carboxy-Modifier C10 C10NHS-Acid
Carboxy-Modifier C5 C5acid
Cholesterol CPG 3-Chl-GP
Cholesteryl-TEG Cholesteryl-TEG
Chromeo 642 NHS Chromeo 642
Circularization Circ
Cy3 NHS-GE Cy3-GE
Cy3B Cy3B
Cy3B Maleimide Cy3B-M
Cyan 500 NHS Cyan 500
Cyanaine 5 NHS Cy5-NHS
Cyanine 3 Cy3
Cyanine 3 CPG 3'-Cy3
Cyanine 5 amidite Cy5
Cyanine 5.5 Cy5.5
Dabcyl-dT Dabcyl-dT
dA-P-Methyl dA-PMe
dAss dAss
DBCO NHS DBCO
DBCO-dT DBCO-dT
DBCO-TEG DBCO-TEG
dC-p-Methyl dC-PMe
dCss dCss
ddA ddA
ddT ddT
Deoxy Inosine dI
dG-P-Methyl dG-PMe
dGss dGss
Dig-NHS Dig-NHS
DihydroUridine Dihyd-U
Diphosphate PP
Dithiol Serinol Phosphoramidite (DTPA) Dithiol Serinol
DNP-TEG DNP-TEG
dSpacer dSp
dT-P-Methyl dT-PMe
dT-thiophosphoramidite dTss
Dy 634 Dy 634
DY 652 NHS DY 652
DY 754 NHS DY 754
DY-485XL NHS DY-485XL
DY-521XL NHS DY-521XL
DY560 NHS DY560
DY682 DY682
DY750 NHS DY750
DyLight 485-LS NHS DyLight 485-LS
DyLight 488 NHS DyLight 488
DyLight 510-LS NHS DyLight 510-LS
DyLight 515-LS NHS DyLight 515-LS
DyLight 550 NHS DyLight 550
Dylight 650 Dylight650
DyLight 755 NHS DyLight 755
DYQ-4 DYQ-4
DYQ-700 NHS ester DYQ-700
Eclipse Quencher Eclipse
fA fA
fAs fAs
fC fC
fCs fCs
Ferrocene CPG 3- Ferrocene
Ferrocene NHS Ferr-NHS
Ferrocene-dT Ferrocene-dT
fG fG
fGs fGs
fluorescein isothiocyanate FITC
Fluorescein Phosphoramidite IntFluor-S
Fluorescein-dT Phosphoramidite IntFluor-dT
fU fU
fUs fUs
G capping Gppp
Glucose Glucose
Hexane diol SpC6
HEX-dT HEX-dT
Hexynyl Phosphoramidite hexynyl
Hydroxymethyl dU HOMe-dU
Inosine rI
Int Uni-LinkTM Amino Modifier iUniAmM
Internal BHQ-1 iBHQ-1
Internal BHQ-3 Int BHQ-3
Inverted dT idT
IRDye 680RD NHS IRDye 680RD
IRDye 700 amidite IRD 700
IRdye 700DX NHS IRDye 700
IRDye QC-1 IRDye QC-1
IRDye800 CW IRDye800 CW
IRDye800 CW-Mal IRDye800 CW-Mal
JOE NHS JOE
KSHLDKH AS
L-dA L-A
L-dC L-C
L-dG L-G
L-dT L-T
LightCycler Red 610 NHS LC Red610
LightCycler Red 640 NHS LC Red640
LNA-A AL
LNA-G GL
LNA-mC CL
LNA-T TL
mA mA
mAs mAs
mC mC
mCs mCs
Meleimide NHS Mal
Methionine Methionine
methylene blue NHS-Bios MB-Bios
Methyltetrazine PEG4 NHS ester Me-Tetrazine
mG mG
mGs mGs
MOE-5MeC eCm
MOE-A eA
MOE-G eG
MOE-T eT
mU mU
mUs mUs
N2-Amino-Modifier C6 dG AmC6 dG
N2-Methyl dG N2-Me dG
N3-Methyl thymidine N3-Me T
N6,N6-Dimethyl 2'-OMe Adenosine DMe-mA
N6,N6-Dimethyl Adenosine DMe-rA
N6-Me-dA N6-Me-dA
N6-Methyl-A N6-Me-rA
N7-Me-G capping M7Gppp
Nap-dU Nap-dU
NFQMGB MGB
Nonane Diol Sp C9
N-POM Caged dT N-POM dT
NTA maleimide NTA
Oregon Green 488 NHS OG 488
Oregon Green 514 NHS OG 514
Pacific Blue NHS Pacific Blue
Pacific Green NHS Pacific Green
Pacific Orange NHS Pacific Orange
PC Amino-Modifier PCAm
PC azide NHS PC azide
PC Biotin PC Biotin
PC Biotin NHS PC-Biotin-NHS
PC Spacer SpPC
Phosphate Phos
phosphorothioate Phosthi
Polyethyleneglycol 2000 CED amidite PEG2000
PseudoUridine Psd-rU
Puromycin CPG 3-Puromycin
QSY 7 NHS QSY 7
QSY 9 NHS QSY 9
Quasar 570 Quasar570
Quasar 570 CPG 3'- Quasar 570
Quasar 570 CPG Copy 3'- Quasar 570
Quasar 570-GP Quasar 570-GP
Quasar 670 Quas 670
Quasar 670-GP Quasar 670-GP
rA rA
rAs rAs
rC rC
rCs rCs
rG rG
rGs rGs
Rhodamine Green NHS Rhodamine Green
rR{rA+rG} rR
rU rU
rUs rUs
rW{rA+rU} rW
rY{rC+rU} rY
SIMA Phosphoramidite SIMA
SMCC-Mal SMCC-Mal
Spacer 18 Sp18
Spacer 9 Sp9
Spacer C12 SpC12
Spermine Z
Sulf-Cy5 NHS S-Cy5-NHS
SynBase Cholesterol CPG 3'-Chl-SB
TAMRA TMR
TAMRA-NHS TMR-NHS
TCO PEG12 NHS TCO PEG12
Tetrazine PEG5 NHS Tetrazine PEG5
Texas Red Texas Red
Thiol C3 Thiol C3 SH
Thiol C3 disulfide Thiol C3 S-S
Thiol modifier C6 dT Thio-C6-dT
Thiol Modifier C6 SH Thiol C6 SH
Thiol Modifier C6 S-S Thiol C6 S-S
Trebler Long Trebler
triphosphate PPP
Trp-dU Trp-dU
Uaq Cap Uaq Cap

How to enter you sequence:
  • DNA bases: A, G, C, T
  • RNA bases: rA, rG, rC, rU
  • 2'-O-methyl RNA bases: mA, mG, mC, mU
  • 2' Fluoro RNA bases: fA, fG, fC, fU
  • Bridged nucleotides (+): +A, +G, +C, +T
  • Phosphorothioate bond: *
How to insert modifications:
  • Enter your sequence without modifications
  • Place the mouse cursor at a point in the sequence where you would like to insert a modification
  • You will see a flashing cursor at that location "|"
  • Move the mouse pointer to the modifications table and click on the link for the modification you wish to insert. (these are the blue links found on the right side of the calculator)
  • The desired modification will be inserted automatically at the cursor location in the sequence