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Custom Long RNA Oligo Synthesis
Long RNA Oligo Synthesis

Long RNA Oligo Synthesis - Tools for Molecular Control

Synthetic long RNA is widely used in a variety of applications ranging from understanding the function of newly discovered genes to gene analysis, as positive controls for any sensitive molecular diagnostic tools and the development of medical therapeutics . However, these newly developed methods have raised the demand for even longer RNA oligonucleotides which allows complete flexibility in the choice of sequences and the ability to introduce modifications at specific sites. Bio-Synthesis provides a one-stop solution to all our customers' nucleic acid technology needs. Our track record and expertise in providing superior quality of synthetic Long RNA Oligo UbermerTM (150 bases and more) with superior quality and services which are unmatched by other suppliers.

Bio-Synthesis has optimized the synthesis and purification of RNA oligos. Every RNA oligonucleotide manufactured at Bio-Synthesis undergoes quality control analysis by PAGE, HPLC and/or MS. Additional service options including custom preparative purification and quality control, formulation, annealing, aliquoting and large batch synthesis up to 10 grams of final product.

Ultramer RNA Transcript Services

Looking for RNA >150 bases? See Ultramer RNA Transcript Synthesis services.

Custom Long RNA

While there has been significant demand for solid phase synthesis of long RNA fragments such as miRNA, shRNA in gene structure and functional studies, the ability to synthesize longer oligos is highly sequence-dependent due to the potential for secondary structure formation and the inherent difficulty for chemical synthesis with additional 2'-OH reactive group of RNA introduces considerable complexity to the synthesis. Therefore, an effective chemical synthetic method for longer RNA is an important basic technology for further advancement on RNA related research.

Bio-Synthesis has met the challenge of synthesizing thousands of synthetic long RNA, RNA UbermerTM up to 200 bases and d2RNATM Long Oligos (3000 bases and more) using the best reagents available, proprietary methods to optimized synthesis protocols and state-of-art synthesis facilities and expertise in providing oligonucleotide synthesis services since 1984.

Each RNA oligo is meticulously monitored during synthesis and controlled according to Bio-Synthesis’s stringent quality assurance and quality control standards. The final product is identified by LC-MS Electrospray, sequencing or other custom analytical methods. Purity is analyzed by high throughput capillary gel or PAGE electrophoresis.

For over 25 years Bio-Synthesis has maintained these gold standards for long RNA oligonucleotide synthesis that saves the researcher a great deal of time and trouble for applications that require direct synthesis of the entire target fragment such as mRNA.

Applications

These long oligos can be used in variety of molecular biology application including but not limited to:

  • RNA control template for real-time PCR
  • mRNA for gene expression
  • Quantitative control for qPCR
  • Internal controls for house-keeping genes
  • External RNA spike-in control assays
  • In-situ Hybridization RNA probes
  • Expression control via anti-sense RNA
  • RNA template for in vitro translation

Purification

All Bio-Synthesis oligos include desalting and deprotection at no additional charge. We strongly recommend oligonucleotide longer than 50 bases to be purified by RNase free poly acrylamide gel electrophoresis (PAGE). If you are unsure about the purification level you need for your research, see our technical bulletin titled What type of purification I need for my applications or contact us for assistance.

Pricing

Unlike other suppliers, there is no additional charge for RNA Oligo UbermerTM Synthesis.

Minimum Yield

Yield will vary based upon base composition, purification, oligo length, scale and modifications. That's why we have a set guaranteed quantity.

Guaranteed Quality

Oligos are routinely checked for length, purity, and composition. Long oligos are typically quality checked by PAGE, ESI-MS, and/or CE. Our global quality control capabilities include MALDI-TOF mass spectrometry, electrospray ionization mass spectrometry (ESI-MS), capillary electrophoresis (CE), and polyacrylamide gel electrophoresis (PAGE). If you are dissatisfied and report an oligo problem within 30 days of order receipt, we will gladly remake your oligo free of charge or provide a credit for the purchase amount.

All orders are shipped with a Quality Assurance document that includes measured yields, melting temperature, MW and µg/OD with every oligo.

Long RNA Oligonucleotide as Synthetic Pre-miRNA-Based shRNA

Bio-Synthesis provides synthesis of oligo ultramer and modification with flexible synthesis scales for your individual research needs. The ability to synthesize RNA is critical to many laboratory techniques. Radiolabled and nonisotopically labeled RNA probes can be used in blot hybridization and nuclease protection assays. Modified RNA can be used for various biochemical and molecular biology studies. RNA can also use as control for gene expression analysis (microinjection, infection with viral transcripts, in vitro translation), structure analysis (protein-RNA binding), and RNA -based diagnostic testing and drug development.

Specifications of RNA UbermerTM

  • Long RNA oligo up to 150 or more bases
  • RNase free PAGE purified
  • Delivered normalized and lyophilized
  • Package in an inert chemical matrix - inactivate and stabilize during sample handling
  • Ideal for gene functional analysis and the development of medical therapeutics
Product Purification Format Length Price
10 µg Purified Ubermer RNA Oligos 51-100 RNase Free PAGE Purified Tube 51-100 bases Inquire
20 µg Purified Ubermer RNA Oligos 51-100 RNase Free PAGE Purified Tube 51-100 bases Inquire
5 µg Purified Ubermer RNA Oligos 101-150 RNase Free PAGE Purified Tube 101-150 bases Inquire
10 µg Purified Ubermer RNA Oligos 101-150 RNase Free PAGE Purified Tube 101-150 bases Inquire

Contact us for large scale synthesis.

Available Modifications

Modifications Price
5' Amino Modifier C12 Inquire for Pricing
5' Biotin Inquire for Pricing
m7GTP Inquire for Pricing
Phosphorothioate Bond Inquire for Pricing
2' O-Methyl RNA bases Inquire for Pricing
3' Amino Modifier Inquire for Pricing
5' 5-Methyl dC Inquire for Pricing
5' 5-Methyl dC Inquire for Pricing
Int 5-Methyl dC Inquire for Pricing
3' Phosphorylation Inquire for Pricing

Contact us for modification not listed above, in most cases we can help!

Links and Resources

Sci Apps:

Oligo Designer

Useful Links

Reference/Citing:

1.
K Terasawa et al. " Synthetic Pre-miRNA-Based shRNA as Potent RNAi Triggers." Journal of Nucleic Acids, Volume 2011 (2011), article ID131479
2.
B. Wang et al. "Synthetic long oligonucleotides to generate artificial templates for use as positive controls in molecular assays: drug resistance mutations in influenza virus as an example." Virology Journal 2011, 8:405
3.
F. Yang et al. "Long non-coding RNA high expressed in hepatocellular carcinoma (lncRNA-HEIH) facilitates tumor growth through enhancer of zeste homolog 2." Hepatology, 2011.
4.
C. Braconi et al. " MicroRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer." Oncogene. 2011, 1-7
Ordering Services
To place an order or request a quotation, please proceed to our custom Order/Quote page or Contact Us for any other questions.
Order can be placed with either a PO (Purchase Order) or credit card. You may place order online using our secure online ordering system. Our customer service representatives are available 24 hours a day, Monday through Friday, to assist you.
   
We accept POs and major credit cards ( ). Your credit card will be billed under "Bio-Synthesis, Inc." Please complete and return our Business Credit Application. For international orders, we must apply the full charge at the time of the order is placed. In the unlikely event that any given order cannot be filled, our guarantee will take the form of a full refund.